Documentation/CLI In Context - Revision history

Hans Meine: mention MeVisLab integration in NA-MIC summer project week 2013

2015-02-15T06:36:29Z

mention MeVisLab integration in NA-MIC summer project week 2013

← Older revision		Revision as of 06:36, 15 February 2015
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	** Preliminary work to integrate CLI into medInria, MAF3		** Preliminary work to integrate CLI into medInria, MAF3
	** Semi-Automatic framework CLI integration tests		** Semi-Automatic framework CLI integration tests
			* [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week NA-MIC summer project week]
			** [http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab Integration of CLI modules into MeVisLab]
	* [[CTK-Hackfest-Nov-2013\|CTK Hackfest]] in London, UK on November, 2013		* [[CTK-Hackfest-Nov-2013\|CTK Hackfest]] in London, UK on November, 2013
	** [[#Second_Interoperability_tests\|Second Interoperability tests]]: GIMIAS's Command Line Plugins in CTK's Command Line Module Explorer, CTK's Command Line Modules in Taverna Workbench		** [[#Second_Interoperability_tests\|Second Interoperability tests]]: GIMIAS's Command Line Plugins in CTK's Command Line Module Explorer, CTK's Command Line Modules in Taverna Workbench
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	The test datasets [https://drive.google.com/file/d/0B3kBRNGHGeP0bGFjZlZNcHJLNEU/edit?usp=sharing source_2down.nii] and [https://drive.google.com/file/d/0B3kBRNGHGeP0N2gzZTVYV2JTX28/edit?usp=sharing target_2down.nii] were obtained from [http://brainweb.bic.mni.mcgill.ca/brainweb BrainWeb] and [http://adni.loni.usc.edu/ ADNI].		The test datasets [https://drive.google.com/file/d/0B3kBRNGHGeP0bGFjZlZNcHJLNEU/edit?usp=sharing source_2down.nii] and [https://drive.google.com/file/d/0B3kBRNGHGeP0N2gzZTVYV2JTX28/edit?usp=sharing target_2down.nii] were obtained from [http://brainweb.bic.mni.mcgill.ca/brainweb BrainWeb] and [http://adni.loni.usc.edu/ ADNI].

	Here are the snapshots of niftyreg on the different platforms:		Here are the snapshots of niftyreg on the different platforms (collected over many events):

	<gallery caption="niftyreg on the different platforms" widths="400px" heights="300px" perrow="3">		<gallery caption="niftyreg on the different platforms" widths="400px" heights="300px" perrow="3">

Hans Meine: add link to screencast for CLI modules in MeVisLab

2015-02-03T12:27:08Z

add link to screencast for CLI modules in MeVisLab

← Older revision		Revision as of 12:27, 3 February 2015
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	Image:Niftyreg-gimias.png\|GIMIAS		Image:Niftyreg-gimias.png\|GIMIAS
	Image:medinria-cli-niftyreg.png\|MedInria		Image:medinria-cli-niftyreg.png\|MedInria
	Image:Niftyreg-MeVisLab.png\|MeVisLab		Image:Niftyreg-MeVisLab.png\|MeVisLab (see [https://www.youtube.com/watch?v=FSCrmiWEcbA screencast])
	Image:Niftyreg-MITK-Workbench.png\|MITK Workbench		Image:Niftyreg-MITK-Workbench.png\|MITK Workbench
	</gallery>		</gallery>

Hans Meine at 10:58, 5 November 2014

2014-11-05T10:58:22Z

← Older revision		Revision as of 10:58, 5 November 2014
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	This page lists some example and notes on different integration of CLI modules in different frameworks including CTK (see [[Documentation/Command_Line_Interface]]). The first interoperability testing was done during the [http://www.creatis.insa-lyon.fr/Interoperability_workshop third] VPH NoE Imaging workshop hold in Lyon, France on October 22-23, 2012. It will be continued in consecutive hackfests. The aim is to try to plug in CLI modules in CLI compatible frameworks and come up with possible improvement of the CLI standard, advice to CLI module and CLI framework developers.		This page lists some example and notes on different integration of CLI modules in different frameworks including CTK (see [[Documentation/Command_Line_Interface]] for a general overview of CLI modules). The first interoperability testing was done during the [http://www.creatis.insa-lyon.fr/Interoperability_workshop third] VPH NoE Imaging workshop hold in Lyon, France on October 22-23, 2012. It will be continued in consecutive hackfests. The aim is to try to plug in CLI modules in CLI compatible frameworks and come up with possible improvement of the CLI standard, advice to CLI module and CLI framework developers.

	== Events ==		== Events ==

MarcoNolden: /* First Interoperability tests */

2014-03-31T13:52:34Z

First Interoperability tests

← Older revision		Revision as of 13:52, 31 March 2014
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	Image:Niftyreg-ctk.png\|CTK command line module explorer		Image:Niftyreg-ctk.png\|CTK command line module explorer
	Image:Niftyreg-slicer.png\|3D Slicer		Image:Niftyreg-slicer.png\|3D Slicer
	Image:Niftyreg-niftyview.png\|NiftyView		Image:Niftyreg-niftyview.png\|NiftyView (based on MITK Workbench)
	Image:Niftyreg-gimias.png\|GIMIAS		Image:Niftyreg-gimias.png\|GIMIAS
	Image:medinria-cli-niftyreg.png\|MedInria		Image:medinria-cli-niftyreg.png\|MedInria

Sascha: /* First Interoperability tests */

2014-03-28T18:05:21Z

First Interoperability tests

← Older revision		Revision as of 18:05, 28 March 2014
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	Image:medinria-cli-niftyreg.png\|MedInria		Image:medinria-cli-niftyreg.png\|MedInria
	Image:Niftyreg-MeVisLab.png\|MeVisLab		Image:Niftyreg-MeVisLab.png\|MeVisLab
			Image:Niftyreg-MITK-Workbench.png\|MITK Workbench
	</gallery>		</gallery>

Hans Meine: add MeVisLab screenshot

2013-12-04T13:08:52Z

add MeVisLab screenshot

← Older revision		Revision as of 13:08, 4 December 2013
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	Image:Niftyreg-gimias.png\|GIMIAS		Image:Niftyreg-gimias.png\|GIMIAS
	Image:medinria-cli-niftyreg.png\|MedInria		Image:medinria-cli-niftyreg.png\|MedInria
			Image:Niftyreg-MeVisLab.png\|MeVisLab
	</gallery>		</gallery>

Ernesto Coto at 16:43, 28 November 2013

2013-11-28T16:43:20Z

← Older revision		Revision as of 16:43, 28 November 2013
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	* Niftyview has nice controls on the way CLI modules are found and loaded (control on the `XML` validation)		* Niftyview has nice controls on the way CLI modules are found and loaded (control on the `XML` validation)
	* Slicer has a nice display of the loaded and non loaded CLI modules (appear in red, there could be more explanation why the loading failed)		* Slicer has a nice display of the loaded and non loaded CLI modules (appear in red, there could be more explanation why the loading failed)

			Test datasets:

			The test datasets [https://drive.google.com/file/d/0B3kBRNGHGeP0bGFjZlZNcHJLNEU/edit?usp=sharing source_2down.nii] and [https://drive.google.com/file/d/0B3kBRNGHGeP0N2gzZTVYV2JTX28/edit?usp=sharing target_2down.nii] were obtained from [http://brainweb.bic.mni.mcgill.ca/brainweb BrainWeb] and [http://adni.loni.usc.edu/ ADNI].

	Here are the snapshots of niftyreg on the different platforms:		Here are the snapshots of niftyreg on the different platforms:

Kikinis: /* First Interoperability tests */

2013-11-27T16:09:20Z

First Interoperability tests

← Older revision		Revision as of 16:09, 27 November 2013
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	Here are the snapshots of niftyreg on the different platforms:		Here are the snapshots of niftyreg on the different platforms:

	<gallery caption="niftyreg on the different platforms" widths="400px" heights="300px" perrow="2">		<gallery caption="niftyreg on the different platforms" widths="400px" heights="300px" perrow="3">
	Image:Niftyreg-ctk.png\|CTK command line module explorer		Image:Niftyreg-ctk.png\|CTK command line module explorer
	Image:Niftyreg-slicer.png\|3D Slicer		Image:Niftyreg-slicer.png\|3D Slicer

Kikinis: /* First Interoperability tests */

2013-11-27T09:03:48Z

First Interoperability tests

← Older revision		Revision as of 09:03, 27 November 2013
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	Here are the snapshots of niftyreg on the different platforms:		Here are the snapshots of niftyreg on the different platforms:

	<gallery caption="niftyreg on the different platforms" widths="400px" heights="~~400px~~" perrow="2">		<gallery caption="niftyreg on the different platforms" widths="400px" heights="300px" perrow="2">
	Image:Niftyreg-ctk.png\|CTK command line module explorer		Image:Niftyreg-ctk.png\|CTK command line module explorer
	Image:Niftyreg-slicer.png\|3D Slicer		Image:Niftyreg-slicer.png\|3D Slicer

Kikinis: /* First Interoperability tests */

2013-11-27T09:03:24Z

First Interoperability tests

← Older revision		Revision as of 09:03, 27 November 2013
Line 33:		Line 33:
	Here are the snapshots of niftyreg on the different platforms:		Here are the snapshots of niftyreg on the different platforms:

	<gallery caption="niftyreg on the different platforms" widths="400px" perrow="2">		<gallery caption="niftyreg on the different platforms" widths="400px" heights="400px" perrow="2">
	Image:Niftyreg-ctk.png\|CTK command line module explorer		Image:Niftyreg-ctk.png\|CTK command line module explorer
	Image:Niftyreg-slicer.png\|3D Slicer		Image:Niftyreg-slicer.png\|3D Slicer

← Older revision		Revision as of 12:27, 3 February 2015
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	Image:Niftyreg-gimias.png\|GIMIAS		Image:Niftyreg-gimias.png\|GIMIAS
	Image:medinria-cli-niftyreg.png\|MedInria		Image:medinria-cli-niftyreg.png\|MedInria
	Image:Niftyreg-MeVisLab.png\|MeVisLab		Image:Niftyreg-MeVisLab.png\|MeVisLab (see [https://www.youtube.com/watch?v=FSCrmiWEcbA screencast])
	Image:Niftyreg-MITK-Workbench.png\|MITK Workbench		Image:Niftyreg-MITK-Workbench.png\|MITK Workbench
	</gallery>		</gallery>

← Older revision		Revision as of 13:52, 31 March 2014
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	Image:Niftyreg-ctk.png\|CTK command line module explorer		Image:Niftyreg-ctk.png\|CTK command line module explorer
	Image:Niftyreg-slicer.png\|3D Slicer		Image:Niftyreg-slicer.png\|3D Slicer
	Image:Niftyreg-niftyview.png\|NiftyView		Image:Niftyreg-niftyview.png\|NiftyView (based on MITK Workbench)
	Image:Niftyreg-gimias.png\|GIMIAS		Image:Niftyreg-gimias.png\|GIMIAS
	Image:medinria-cli-niftyreg.png\|MedInria		Image:medinria-cli-niftyreg.png\|MedInria